Research and Publication Ethics: The experimental study was performed at Fırat University Experimental Research Center and Fırat University Medical School Histology and Embryology Laboratory after obtaining an approval from the local ethics committee (Approval No. 63; date, May 9, 2013). The study was completely funded by Fırat University Scientific Research Projects Coordination Unit (Project No. TF.1327).
Animals: The study included 30 adult male Wistar-Albino rats weighing 200-230 g that were aged 8-10 weeks. The animals were obtained from Fırat University Experimental Research Center and were kept at a room temperature of 22-25 °C with a 12/12 h light/dark cycle. The animals were housed individually in special metabolism cages and the floors of the cages were cleaned on a daily basis. The animals were fed standard rat chow with food and tap water provided ad libitum. The chow and the food were given in steel food cups and the water was given using water bottles.
Study Groups: The 30 rats were divided into 5 groups with 6 rats each:
Control group: No intervention was performed.
Sham Group 1 (2 h) (Sham-2): With the rats were placed in the supine position, bilateral common carotid arteries were uncovered via a simple midline cervical incision and then the skin incision was closed using 3-0 silk suture. After 2 h, the rats were decapitated.
Sham Group 2 (6 h) (Sham-6): In the supine position, bilateral common carotid arteries were uncovered and via a simple midline cervical incision and then the skin incision was closed using 3-0 silk suture. After 6 h, the rats were decapitated.
Ischemia/Reperfusion (I/R) Group 1 (2 h) (I/R-2): In the supine position, bilateral common carotid arteries were removed via a simple midline cervical incision and then bilateral arteries were clamped for 45 min using aneurysm clips, followed by 2-h reperfusion. Subsequently, all the rats were decapitated.
Ischemia/Reperfusion (I/R) Group 2 (6 h) (I/R-6): In the supine position, bilateral common carotid arteries were removed via a simple midline cervical incision and then bilateral arteries were clamped for 45 min using aneurysm clips, followed by 6-h reperfusion. Subsequently, all the rats were decapitated 10.
Sampling of brain tissues: At the end of the experiment, all the rats were decapitated under ketamine (75 mg/kg, i.p.) and xylazine (10 mg/kg, i.p.) anesthesia. Shortly afterwards, the brain tissues were removed and were stored at –80 °C until the measurement of Malondialdehyde (MDA), TRPM2, and messenger RNA (mRNA) levels. For histological analysis, the tissues were fixed in formalin solution and then administered routine histological follow-up series and embedded in paraffin blocks.
MDA Assay: A buffer solution containing 0.42 g Tris-Base + 1.43 g Tris-HCI + 3 gr KCI, and 0.5 mL Tween 20 was dissolved in 250 mL of distilled water and was used for the homogenization of the tissue samples. The tissue was ground by adding 5 mL of homogenization buffer per X g of tissue samples. The homogenate was centrifuged at 5.000 rpm for 5 min. Subsequently, 1 mL of the supernatant was transferred into a fresh tube and then was added with 1 mL of 10% TCA (10 g TCA was dissolved in 100 mL of distilled water), followed by the addition of 1 mL of 0.6% TBA (0.6 g TBA was dissolved in 100 mL of distilled water,1 mL of distilled water, and 0.5 mL of 4% HCI, (4 mL of HCI was dissolved in 100 mL of distilled water), respectively. The mixture was incubated at 90-95 °C for 120 min. Following the incubation process, the tubes were cooled off to room temperature and were vortexed with 3 mL butanol. After cooling, the tubes were centrifuged at 5,000 rpm for 5 min and then the top (red-pink) layer was removed and pipetted into a quartz cuvette and measured at 532 nm against butanol as blank. The absorbance value was calculated based on the X: (measuredABS +0.0344)/0.0492 formula. The obtained value was multiplied by 5 (because the tissue homogenate was prepared with 5 mL of buffer) and the resultant value was accepted as the tissue weight in the homogenate.
TUNEL Staining: Paraffin sections at 4-6 μm thickness were mounted on polylysine slides. Apoptotic cells were determined using ApopTag plus Peroxidase in Situ Apoptosis Detection Kit (Chemicon, cat no: S7101, USA) in accordance with the guidelines provided by the manufacturer.
The sections were deparaffinized with xylene, passed through graded alcohol series, and then rinsed in phosphate buffered saline (PBS). They were then incubated in 0.05% proteinase K for 10 min and were reincubated in 3% hydrogen peroxidase in water for 5 min to block endogenous peroxidase activity. Between each incubation step, the sections were rinsed in PBS. A 6-min incubation with Equilibration Buffer was followed by a 60-min incubation at 37 °C in a humidity chamber (70% µL Reaction Buffer + 30% TdT Enzyme). The sections were incubated in stop/wash buffer for 10 min to terminate the reaction and then were incubated with anti-digoxigenin-peroxidase for 30 min. Apoptotic cells were visualized by incubating the cells in the 3,3-diaminobenzidine. (DAB) substrate. The sections were counterstained with Harris' hematoxylin and then were occluded with appropriate occluding solutions. For negative controls, distilled reaction buffer instead of TdT was used.
In the evaluation of TUNEL staining, the cells stained with blue in Harris' hematoxylin were accepted as normal cells and the cells stained with brown were accepted as apoptotic cells. At 10x magnification, a minimum of 500 normal and apoptotic cells were counted in a randomly selected field. The apoptotic index was calculated as the percentage of apoptotic cells to total (normal + apoptotic) cells in a given field and was used for statistical analyses.
Immunohistochemical Staining: The immunoreactivity of TRPM2 in brain tissue was determined using avidin-biotin-peroxidase complex (ABC). Paraffin sections at 5-6 μm thickness were mounted on polylysine slides and then were incubated in H2O2 to block endogenous peroxidase activity. The sections were deparaffinized with xylene, passed through graded alcohol series, and then boiled in a microwave (750 W) in citrate buffer (pH 6.0) for 12 min for antigen retrieval. A 5-min incubation with Ultra V Block (TA-125-UB, Lab Vision Corporation, USA) was performed to block background staining, followed by a 60-min incubation with the primary antibody (Rabbit Anti-TRPM2 antibody, ab101738, Abcam, Cambridge, UK). Subsequently, the sections were incubated with the secondary antibody (biotinylated Goat Anti-Poliyvalent (anti-mouse / rabbit IgG), TP–125-BN, Lab Vision Corporation, USA) in humid chamber at room temperature for 30 min. After incubation with Streptavidin Alkaline Phosphatase (TS-060-AP, Lab Vision Corporation, USA) in humid chamber at room temperature for 30 min, the sections were immersed in distilled water. Fast-Red Substrate System (Lab Vision Corporation, USA) solution was instilled on the tissues and following the detection of an image signal on the light microscope, the sections were simultaneously rinsed with distilled water. The sections were then counterstained with Mayer’s hematoxylin, rinsed with distilled water, and occluded with the appropriate occluding solution (Large Volume Vision Mount, Lab Vision Corporation, USA). For positive controls, the tissues were compared with breast tissues. For negative control, PBS instead of primary antibody was used and the other steps of the procedure were applied in the same manner. In the evaluation of immunohistochemical staining, a histoscore was calculated using the formula (histoscore = prevalence x severity) based on the prevalence (0.1: <%25, 0.4:%26-50, 0.6:%51-75, 0.9:%76-100) and the severity (0: absent, +0.5: very low, +1: low, +2: moderate, +3: extensive) of the immunoreactivity.
Polymerase Chain Reaction (PCR) Assay
Total RNA Isolation and Complementary DNA (cDNA) Synthesis: The GeneJet RNA Purification kit (cat. No: K0731, Thermo Scientific, Lithuania) was used for isolating RNA from brain tissue, in accordance with the guidelines provided by the manufacturer. The RNA pellet was rinsed once in 75% ethanol, air dried, and resuspended in 10-30 μL of RNase-free water. Complementary DNA (cDNA) synthesis was conducted using a High-Capacity cDNA Reverse Transcription Kit (cat no: 4368814, Applied Biosystems, Fostercity, USA), with a 10 µL reaction volume which contained 5 µL RNA sample, 1 µL 10XRT buffer, 1 µL 10XRT random primers, 2.1 µL nuclease-free water, 0.4 µL 25X dNTP mix, and 0.5 µL MultiScribe™ Reverse Transcriptase enzyme. The PCR was performed for cDNA synthesis at 25 °C for 10 min, at 37 °C for 120 min, and at 85 °C for 5 min using a Veriti 96 well thermal cycler (Applied Biosystems, Fostercity, USA).
Gene Expression Analysis: Gene expression analysis was performed using SYBR-green based primers (Qiagen, USA). Table 1 presents the primers studied and their properties. The mixture needed for gene expression analysis was made with iTaq universal SYBR green supermix (cat. No. 172-5121, Bio-Rad, USA). Measurement of gene expression levels was performed using Applied Biosystems 7500 Real-Time PCR system (Applied Biosystems, Fostercity, USA). For the gene expression analysis, Glyceraldehyde 3-phosphate dehydrogenase (GAPDH) (Cat. No. QT00079247, Qiagen, USA) was utilized as control gene (housekeeping). Following the quantitative RT-PCR analyses, the differences in gene expression were calculated using the 2-∆∆CT method.
Statistical Analysis: Data were analyzed using IBM SPSS Statistics for Windows, Version 22.0 (Armonk, NY: IBM Corp.). All data were expressed as mean ± standard deviation (SD). Groups were compared using One-way ANOVA followed by post-hoc Tukey’s test. A p value of <0.05 was considered significant.